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Assembly

Fasta file @

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Details

          Mapping mode = Create simple contig sequences (fast)

          Automatic bubble size = Yes

          Minimum contig length = 400

          Automatic word size = Yes

          Perform scaffolding = Yes

         

input: Oct_11__SF_8_ACTTGA_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Mar_11__SF_8_TTAGGC_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Mar_11__SF_14_TTAGGC_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Mar_11__SF2_ATCACG_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Nov_10__SF_2_TAGCTT_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Jul_10__SF2_GATCAG_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Nov_10__SF_14_ATCACG_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Jul_10__SF14_GATCAG_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Jul_10__SF8_GATCAG_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Oct_11__SF_14_ACTTGA_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Nov_10__SF_8_ATCACG_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

         

input: Oct_11__SF_2_TTAGGC_R1 (paired) trimmed (paired)

          Colorspace alignment = No

          Guidance only paired reads = No

          Min distance = 180

          Max distance = 250

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Note trying fast method on Server- default setting (version 4)